PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 188aa    MW: 21396.5 Da    PI: 9.6531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12274genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-065779123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C++C++ F r  nL+ H r+H
  Tp57577_TGAC_v2_mRNA12274 57 YVCEICNQGFQRDQNLQMHRRRH 79
                               9*********************9 PP

2zf-C2H218.45.7e-06135157123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C +C+k +  +s++k Hi+t+
  Tp57577_TGAC_v2_mRNA12274 135 WVCDKCNKGYAVQSDYKAHIKTC 157
                                58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-65679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.93E-65679No hitNo description
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
PfamPF128740.00735775No hitNo description
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035521099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-5126156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.93E-6130155No hitNo description
SMARTSM0035547135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MLDNNNTATN STSDPAFALS ENGGVNNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET TQGLKKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS NHKQWVCDKC NKGYAVQSDY KAHIKTCGTR GHSCDCGRVF SRFVFLLCCF  180
FLSFTFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580086.11e-117PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotQ9C9X71e-102IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLK7KQ351e-117K7KQ35_SOYBN; Uncharacterized protein
STRINGGLYMA05G26780.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.14e-99indeterminate(ID)-domain 14